Packages for 3D-EM Image Analysis

Information about image processing and 3D reconstruction programs is available through NCMIR's EM-Outreach site.

Please visit the comprehensive Wikipedia entry for Software Tools for Molecular Microscopy. The following software is included in the list:

  • 2dx
  • ACE
  • amira
  • Appion Tilt Picker
  • AUTO3DEM
  • Bsoft
  • Chimera
  • ctffind, ctftilt
  • Cyclops
  • em2em
  • EM3D
  • EMAN
  • EM-BFACTOR
  • Emfit
  • EMStudio
  • Frealign
  • FSC
  • IHRSR
  • IMAGIC
  • IMOD
  • iplt
  • Leginon
  • MRC IMAGE PROCESSING PACKAGE
  • PFT3DR
  • Phoelix
  • protomo
  • pyappion
  • RIVEM
  • RMEASURE
  • MDPP
  • Ruby-Helix
  • SerialEM
  • Signature
  • Situs
  • SPARX
  • Spider
  • StokesLabProcedures
  • Suprim
  • SwarmPS
  • TOM
  • TOMOAND
  • TOMOCTF, EMCTF
  • UCSF Tomography
  • UROX
  • Xmipp

Additional software and resources are also available: